STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slr0060ORF_ID:slr0060; unknown protein. (369 aa)    
Predicted Functional Partners:
slr0058
ORF_ID:slr0058; unknown protein.
     
 0.985
slr0061
ORF_ID:slr0061; unknown protein.
     
 0.984
phbC
Poly(3-hydroxyalkanoate) synthase; When expressed in E.coli with Synechocystis PhaE and C.necator PhaA and PhaB, confers the ability to synthesize up to 13% (w/w) poly(3-hydroxybutyrate) (PHB) depending on the carbon source; all 4 genes are necessary for PHB production. Cell-free in vitro coexpression with PhaE gives a heterodimer able to polymerize 3- hydroxybutyrate-CoA ; Belongs to the PHA/PHB synthase family. Type III PhaC subfamily.
 
   
 0.951
slr1829
Poly(3-hydroxyalkanoate) polymerase subunit PhaE; When expressed in E.coli with Synechocystis PhaC and C.necator PhaA and PhaB, confers the ability to synthesize up to 13% (w/w) poly(3-hydroxybutyrate) (PHB) depending on the carbon source; all 4 genes are necessary for PHB production. Cell-free in vitro coexpression with PhaE gives a heterodimer able to polymerize 3- hydroxybutyrate-CoA. This subunit has no catalytic activity but enhances the activity of PhaC, the catalytic subunit (By similarity).
  
   
 0.934
trxA-2
Thiol:disulfide interchange protein; Required for disulfide bond formation in some proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process (By similarity); Belongs to the thioredoxin family.
     
 0.704
ssl2501
Phasin PhaP; A phasin, it attaches to the polyhydroxybutyrate (PHB) granule surface regulating the number and size of PHB granules within a cell. It probably also acts as a regulator affecting the biosynthetic activity of PHB synthase in vivo.
      
 0.690
thl
Acetyl coenzyme A acetyltransferase (thiolase); When expressed in E.coli with Synechocystis PhaB, PhaC and PhaE confers the ability to synthesize up to 12% (w/w) poly(3- hydroxybutyrate) (PHB) depending on the carbon source.
 
   
 0.622
sll0590
ORF_ID:sll0590; unknown protein.
 
     0.574
fabG-2
3-ketoacyl-acyl carrier protein reductase; Catalyzes the reduction of acetoacetyl-CoA to (R)-3- hydroxybutyryl-CoA. When expressed in E.coli with Synechocystis PhaA, PhaC and PhaE confers the ability to synthesize up to 12% (w/w) poly(3-hydroxybutyrate) (PHB) depending on the carbon source ; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.563
slr0059
ORF_ID:slr0059; unknown protein.
       0.563
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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