Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| pds | petJ | gene:10498715 | gene:10498217 | Phytoene desaturase; This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. | Cytochrome c553; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | 0.490 |
| pds | psbO | gene:10498715 | gene:10499353 | Phytoene desaturase; This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. | Photosystem II manganese-stabilizing polypeptide; MSP binds to a putative Mn-binding protein and keeps 2 of the 4 Mn-atoms associated with PSII. | 0.773 |
| pds | sll0558 | gene:10498715 | gene:10497437 | Phytoene desaturase; This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. | ORF_ID:sll0558; hypothetical protein; Belongs to the ycf53 family. | 0.716 |
| pds | sll0608 | gene:10498715 | gene:10499862 | Phytoene desaturase; This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. | ORF_ID:sll0608; hypothetical protein. | 0.670 |
| pds | sll0609 | gene:10498715 | gene:10499861 | Phytoene desaturase; This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. | ORF_ID:sll0609; unknown protein. | 0.737 |
| pds | sll0662 | gene:10498715 | gene:10500263 | Phytoene desaturase; This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. | Ferredoxin (bacterial type ferredoxin family); ORF_ID:sll0662. | 0.513 |
| pds | sll1071 | gene:10498715 | gene:10498172 | Phytoene desaturase; This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. | ORF_ID:sll1071; hypothetical protein. | 0.885 |
| pds | sll1738 | gene:10498715 | gene:10498290 | Phytoene desaturase; This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. | ORF_ID:sll1738; hypothetical protein. | 0.472 |
| pds | sll2002 | gene:10498715 | gene:10498593 | Phytoene desaturase; This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. | ORF_ID:sll2002; hypothetical protein. | 0.710 |
| pds | ssl0353 | gene:10498715 | gene:10499922 | Phytoene desaturase; This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. | ORF_ID:ssl0353; hypothetical protein. | 0.760 |
| petJ | pds | gene:10498217 | gene:10498715 | Cytochrome c553; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | Phytoene desaturase; This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. | 0.490 |
| petJ | psbO | gene:10498217 | gene:10499353 | Cytochrome c553; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | Photosystem II manganese-stabilizing polypeptide; MSP binds to a putative Mn-binding protein and keeps 2 of the 4 Mn-atoms associated with PSII. | 0.773 |
| petJ | sll0608 | gene:10498217 | gene:10499862 | Cytochrome c553; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | ORF_ID:sll0608; hypothetical protein. | 0.438 |
| petJ | sll0609 | gene:10498217 | gene:10499861 | Cytochrome c553; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | ORF_ID:sll0609; unknown protein. | 0.751 |
| petJ | sll0662 | gene:10498217 | gene:10500263 | Cytochrome c553; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | Ferredoxin (bacterial type ferredoxin family); ORF_ID:sll0662. | 0.462 |
| petJ | sll1071 | gene:10498217 | gene:10498172 | Cytochrome c553; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | ORF_ID:sll1071; hypothetical protein. | 0.676 |
| petJ | sll1738 | gene:10498217 | gene:10498290 | Cytochrome c553; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | ORF_ID:sll1738; hypothetical protein. | 0.538 |
| petJ | sll2002 | gene:10498217 | gene:10498593 | Cytochrome c553; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | ORF_ID:sll2002; hypothetical protein. | 0.540 |
| petJ | ssl0353 | gene:10498217 | gene:10499922 | Cytochrome c553; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | ORF_ID:ssl0353; hypothetical protein. | 0.763 |
| psbO | pds | gene:10499353 | gene:10498715 | Photosystem II manganese-stabilizing polypeptide; MSP binds to a putative Mn-binding protein and keeps 2 of the 4 Mn-atoms associated with PSII. | Phytoene desaturase; This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. | 0.773 |
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