STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbpARNA binding protein; ORF_ID:sll0517. (101 aa)    
Predicted Functional Partners:
hoxF
Hydrogenase subunit; ORF_ID:sll1221.
    
   0.948
yibO
2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
   
 0.931
sll0514
ORF_ID:sll0514; unknown protein; To M.jannaschii MJ0047, MJ0162 and MJ1236.
   
 0.828
sll1033
ORF_ID:sll1033; unknown protein.
   
 
 0.784
sll0524
ORF_ID:sll0524; hypothetical protein.
      
 0.690
sll0623
ORF_ID:sll0623; unknown protein.
      
 0.690
sll1439
ORF_ID:sll1439; unknown protein.
   
 0.682
sll1121
DNA helicase; ORF_ID:sll1121; unknown protein.
     
 0.681
ams1
Alpha-mannosidase; ORF_ID:slr0323.
   
  
 0.681
sll1049
ORF_ID:sll1049; unknown protein.
      
 0.680
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.