STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sll1489ORF_ID:sll1489; hypothetical protein. (279 aa)    
Predicted Functional Partners:
slr1717
ORF_ID:slr1717; hypothetical protein; Belongs to the LarE family.
 
 0.990
slr1411
Putative nickel insertion protein; ORF_ID:slr1411; unknown protein; Belongs to the LarC family.
 
  
 0.910
sll0486
KaiB-like protein 2; ORF_ID:sll0486; PCC7942 clock gene...ORFE; Belongs to the KaiB family.
   
  
 0.820
cbiM
CbiM protein; ORF_ID:sll0383.
  
    0.756
sll1488
ORF_ID:sll1488; unknown protein.
       0.741
slr1942
KaiC-like protein 2; ORF_ID:slr1942; PCC7942 clock gene...ORFF; Belongs to the KaiC family.
      
 0.706
slr0756
Circadian clock protein KaiA; Component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, it enhances the phosphorylation status of KaiC. In contrast, the presence of KaiB in the complex decreases the phosphorylation status of KaiC, suggesting that KaiB acts by antagonizing the interaction between KaiA and KaiC. A KaiA dimer is sufficient to enhance KaiC he [...]
      
 0.599
slr0757
Circadian clock protein KaiB; Component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The KaiABC complex may act as a promoter-non-specific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, it decreases the phosphorylation status of KaiC. It has no effect on KaiC by itself, but instead needs the presence of both KaiA and KaiC, suggesting that it acts by antagonizing the interaction between KaiA and KaiC.
   
  
 0.585
slr1520
ORF_ID:slr1520; unknown protein.
 
    0.552
sll1220
Potential NAD-reducing hydrogenase subunit; ORF_ID:sll1220.
      
 0.542
Your Current Organism:
Synechocystis sp. PCC6803
NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B
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