STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT36977.1Hypothetical protein. (84 aa)    
Predicted Functional Partners:
SDR95037.1
DNA translocase FtsK.
    
 
 0.789
SDT61397.1
Subtilase-type serine protease.
  
 0.767
SDT61414.1
Subtilase-type serine protease.
  
 0.767
SDT61482.1
VRR-NUC domain-containing protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
  
 0.754
SDT49473.1
Amino acid adenylation domain-containing protein.
  
 
 0.743
SDT43057.1
Iron complex outermembrane recepter protein.
    
 
 0.737
SDS44313.1
Exo-beta-1,3-glucanase, GH17 family.
    
 0.718
SDS97631.1
Type VI secretion system protein ImpK.
  
 
 0.709
SDS42114.1
Hypothetical protein.
  
 0.662
SDT54758.1
Alginate lyase.
  
 0.662
Your Current Organism:
Pseudomonas prosekii
NCBI taxonomy Id: 1148509
Other names: CCM 7990, LMG 26867, LMG:26867, P. prosekii, Pseudomonas prosekii Kosina et al. 2014, Pseudomonas sp. AN/28/1, strain AN/28/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.