STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT53461.1DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (291 aa)    
Predicted Functional Partners:
SDT61953.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.737
SDS12539.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.719
SDS26801.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.712
SDR90382.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.632
SDR82030.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.631
SDT00418.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.617
SDT53444.1
Predicted arabinose efflux permease, MFS family.
       0.533
SDS67941.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.528
SDT61922.1
LysR family transcriptional regulator, cyn operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.522
SDS79925.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.516
Your Current Organism:
Pseudomonas prosekii
NCBI taxonomy Id: 1148509
Other names: CCM 7990, LMG 26867, LMG:26867, P. prosekii, Pseudomonas prosekii Kosina et al. 2014, Pseudomonas sp. AN/28/1, strain AN/28/1
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