STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycjP_7Inner membrane ABC transporter permease protein ycjP. (310 aa)    
Predicted Functional Partners:
ugpA_3
Sn-glycerol-3-phosphate transport system permease protein ugpA.
 
  0.996
CUN88438.1
Maltose-binding periplasmic proteins/domains.
 
  0.950
ugpA_4
Sn-glycerol-3-phosphate transport system permease protein ugpA.
  
  0.901
ugpA_2
Sn-glycerol-3-phosphate transport system permease protein ugpA.
 
  0.899
ycjO_8
Inner membrane ABC transporter permease protein ycjO.
  
  0.897
lipO_4
Lipoprotein lplA.
  
  0.892
ugpA_1
Sn-glycerol-3-phosphate transport system permease protein ugpA.
  
  0.889
ycjO_2
Inner membrane ABC transporter permease protein ycjO.
  
  0.888
ycjO_5
Inner membrane ABC transporter permease protein ycjO.
  
  0.888
ycjO_7
Inner membrane ABC transporter permease protein ycjO.
  
  0.888
Your Current Organism:
Fusicatenibacter saccharivorans
NCBI taxonomy Id: 1150298
Other names: Clostridium sp. HT03-11, Clostridium sp. HT03-14, Clostridium sp. HT03-186, Clostridium sp. HT03-22, Clostridium sp. KO-38, Clostridium sp. TT-111, DSM 26062, F. saccharivorans, Fusicatenibacter saccharivorans Takada et al. 2013, JCM 18507, YIT 12554, strain HT03-11
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