STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUO14529.1RNA polymerase sigma factor SigY. (139 aa)    
Predicted Functional Partners:
CUO14572.1
Helix-turn-helix domain.
 
    0.953
CUO55753.1
Helix-turn-helix domain.
 
     0.781
CUO14282.1
Conjugative transposon protein TcpC.
  
     0.769
CUO13927.1
Replication initiation factor.
  
  
 0.759
CUO13795.1
Bacterial protein of uncharacterised function (DUF961).
  
    0.757
CUO13840.1
Bacterial protein of uncharacterised function (DUF961).
  
   
 0.756
CUO14207.1
Uncharacterised protein.
  
     0.750
CUO14317.1
Anaerobic benzoate catabolism transcriptional regulator.
  
     0.734
iap
Probable endopeptidase p60 precursor.
  
     0.732
CUO55358.1
Anaerobic benzoate catabolism transcriptional regulator.
  
     0.722
Your Current Organism:
Fusicatenibacter saccharivorans
NCBI taxonomy Id: 1150298
Other names: Clostridium sp. HT03-11, Clostridium sp. HT03-14, Clostridium sp. HT03-186, Clostridium sp. HT03-22, Clostridium sp. KO-38, Clostridium sp. TT-111, DSM 26062, F. saccharivorans, Fusicatenibacter saccharivorans Takada et al. 2013, JCM 18507, YIT 12554, strain HT03-11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.