STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aguAAgmatine deiminase. (376 aa)    
Predicted Functional Partners:
CUO47027.1
N-carbamoyl-D-amino acid hydrolase.
 
 0.999
speA
Arginine decarboxylase.
    
 0.906
CUO47102.1
Diaminopimelate decarboxylase.
    
 0.871
CUO47133.1
Saccharopine dehydrogenase.
       0.787
amiE
N-carbamoyl-D-amino acid hydrolase.
 
 0.701
CUO46996.1
Na+/H+ antiporter NhaC.
     
 0.587
nadE
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.577
potD
Spermidine/putrescine-binding periplasmic protein precursor.
  
  
 0.536
CUO89013.1
Arginase/agmatinase/formimionoglutamate hydrolase%2C arginase family.
    
 0.515
CUO42299.1
Spermidine synthase.
    
 0.507
Your Current Organism:
Fusicatenibacter saccharivorans
NCBI taxonomy Id: 1150298
Other names: Clostridium sp. HT03-11, Clostridium sp. HT03-14, Clostridium sp. HT03-186, Clostridium sp. HT03-22, Clostridium sp. KO-38, Clostridium sp. TT-111, DSM 26062, F. saccharivorans, Fusicatenibacter saccharivorans Takada et al. 2013, JCM 18507, YIT 12554, strain HT03-11
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