STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abfA_3Alpha-N-arabinofuranosidase. (499 aa)    
Predicted Functional Partners:
abfA_2
Alpha-N-arabinofuranosidase.
 
  
 
0.900
xynB_2
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.888
uxaC
Uronate isomerase.
     
 0.866
CUO63223.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.854
CUO07693.1
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.833
CUN58348.1
Uncharacterised protein.
    
  0.805
CUN96840.1
Uncharacterized protein conserved in bacteria.
 
   
 0.773
csxA
Exo-beta-D-glucosaminidase precursor.
  
  
  0.617
CUN92799.1
Cellobiose phosphorylase.
      
 0.613
CUO89950.1
Cellobiose phosphorylase.
      
 0.613
Your Current Organism:
Fusicatenibacter saccharivorans
NCBI taxonomy Id: 1150298
Other names: Clostridium sp. HT03-11, Clostridium sp. HT03-14, Clostridium sp. HT03-186, Clostridium sp. HT03-22, Clostridium sp. KO-38, Clostridium sp. TT-111, DSM 26062, F. saccharivorans, Fusicatenibacter saccharivorans Takada et al. 2013, JCM 18507, YIT 12554, strain HT03-11
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