STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gltD_2Glutamate synthase [NADPH] small chain. (494 aa)    
Predicted Functional Partners:
gltB
Ferredoxin-dependent glutamate synthase 1.
 0.999
rnfB
Nitrogen fixation protein rnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
   
 0.982
pyrK_3
Dihydrdoorotate oxidase B%2C electron transfer subunit.
 
 0.978
porA
Pyruvate synthase subunit porA.
 
 
 0.974
gdhA
NADP-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 0.958
glnA_2
Glutamine synthetase.
  
 
 0.948
CUN80897.1
Iron hydrogenase 1.
 
 
 0.920
gltD_1
Glutamate synthase [NADPH] small chain.
  
  
 
0.880
calB
Coniferyl aldehyde dehydrogenase.
    
 0.876
carB
Carbamoyl-phosphate synthase large chain; Belongs to the CarB family.
  
 
 0.875
Your Current Organism:
Fusicatenibacter saccharivorans
NCBI taxonomy Id: 1150298
Other names: Clostridium sp. HT03-11, Clostridium sp. HT03-14, Clostridium sp. HT03-186, Clostridium sp. HT03-22, Clostridium sp. KO-38, Clostridium sp. TT-111, DSM 26062, F. saccharivorans, Fusicatenibacter saccharivorans Takada et al. 2013, JCM 18507, YIT 12554, strain HT03-11
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