STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIVBSpoIVB peptidase precursor. (408 aa)    
Predicted Functional Partners:
spo0A_2
Stage 0 sporulation protein G; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
     0.966
CUO42822.1
ATP-dependent Clp protease proteolytic subunit.
  
  
 0.790
spoIIID
14 kDa transcription factor.
  
  
 0.780
CUO51754.1
Stage V sporulation protein AC.
  
    0.778
spoVAD
Stage V sporulation protein AD.
  
    0.777
CUN75234.1
Small%2C acid-soluble spore protein alpha.
  
    0.776
spo0A_1
Stage 0 sporulation protein G.
 
     0.776
spoIIE
Stage II sporulation protein E.
  
   
 0.776
CUO84495.1
Uncharacterized protein conserved in bacteria.
  
   
 0.776
CUN63229.1
Stage II sporulation protein R.
  
   
 0.775
Your Current Organism:
Fusicatenibacter saccharivorans
NCBI taxonomy Id: 1150298
Other names: Clostridium sp. HT03-11, Clostridium sp. HT03-14, Clostridium sp. HT03-186, Clostridium sp. HT03-22, Clostridium sp. KO-38, Clostridium sp. TT-111, DSM 26062, F. saccharivorans, Fusicatenibacter saccharivorans Takada et al. 2013, JCM 18507, YIT 12554, strain HT03-11
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