STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW21325.1Dual-action HEIGH metallo-peptidase. (311 aa)    
Predicted Functional Partners:
SFW58619.1
Por secretion system C-terminal sorting domain-containing protein.
 
     0.755
SFW63008.1
Peptidase.
  
     0.582
SFW76967.1
Peptidase.
  
     0.521
SFW19046.1
Outer membrane receptor for ferrienterochelin and colicins.
  
     0.477
SFW12949.1
PKD-like domain-containing protein.
  
     0.430
SFW25307.1
Hypothetical protein.
 
     0.429
SFW67062.1
Hypothetical protein.
  
     0.425
SFW71373.1
Phytoene dehydrogenase-related protein.
  
     0.409
Your Current Organism:
Sinomicrobium oceani
NCBI taxonomy Id: 1150368
Other names: CGMCC 1.12145, Flavobacteriaceae bacterium SCSIO 03483, KCTC 23994, S. oceani, SCSIO 03483, Sinomicrobium oceani Xu et al. 2013
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.