STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW29887.1Starch synthase. (269 aa)    
Predicted Functional Partners:
SFW62479.1
Alpha-amylase; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.947
SFW62395.1
Alpha amylase, catalytic domain.
 
 
 0.946
SFW49900.1
N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA.
     
 0.746
SFW65276.1
Glycosyltransferase involved in cell wall bisynthesis.
     
 0.746
SFW62406.1
Glycosidase; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.704
SFW28802.1
Hypothetical protein.
   
    0.649
SFW33829.1
Iron-containing alcohol dehydrogenase.
   
    0.648
SFW57333.1
Alcohol dehydrogenase, class IV.
   
    0.648
SFW29899.1
Protein of unknown function.
  
    0.604
glmS
Glucosamine--fructose-6-phosphate aminotransferase (isomerizing); Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
     
 0.570
Your Current Organism:
Sinomicrobium oceani
NCBI taxonomy Id: 1150368
Other names: CGMCC 1.12145, Flavobacteriaceae bacterium SCSIO 03483, KCTC 23994, S. oceani, SCSIO 03483, Sinomicrobium oceani Xu et al. 2013
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.