STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW30222.1Protein of unknown function. (103 aa)    
Predicted Functional Partners:
rsmA
16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
       0.754
SFW30209.1
Tetratricopeptide repeat-containing protein.
       0.708
SFW30246.1
Magnesium transporter; Acts as a magnesium transporter.
       0.705
SFW21035.1
Hypothetical protein.
  
     0.551
SFW43179.1
Hypothetical protein.
  
     0.539
SFW12774.1
Protein of unknown function.
  
     0.522
SFW30200.1
seryl-tRNA synthetase.
       0.490
SFW70226.1
Hypothetical protein.
  
     0.489
SFW30141.1
Vitamin K-dependent gamma-carboxylase.
 
     0.470
SFW18672.1
Hypothetical protein.
  
     0.455
Your Current Organism:
Sinomicrobium oceani
NCBI taxonomy Id: 1150368
Other names: CGMCC 1.12145, Flavobacteriaceae bacterium SCSIO 03483, KCTC 23994, S. oceani, SCSIO 03483, Sinomicrobium oceani Xu et al. 2013
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