SFW42664.1 protein (Sinomicrobium oceani) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

SFW42664.1

Serine/threonine protein phosphatase 1. (242 aa)

Predicted Functional Partners:

SFW42677.1

0.683

SFW38253.1

0.536

SFW42690.1

0.488

SFW11421.1

0.485

SFW42742.1

0.467

SFW11605.1

0.463

SFW14895.1

0.450

SFW11678.1

0.443

SFW34043.1

0.424

SFW26330.1

0.420

Your Current Organism:

Sinomicrobium oceani

NCBI taxonomy Id: 1150368
Other names: CGMCC 1.12145, Flavobacteriaceae bacterium SCSIO 03483, KCTC 23994, S. oceani, SCSIO 03483, Sinomicrobium oceani Xu et al. 2013

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFW11421.1	SFW42664.1	SAMN02927921_00018	SAMN02927921_01627	Nucleoside-diphosphate-sugar epimerase.	Serine/threonine protein phosphatase 1.	0.485
SFW11605.1	SFW14895.1	SAMN02927921_00039	SAMN02927921_00281	Hypothetical protein.	Protein of unknown function.	0.447
SFW11605.1	SFW26330.1	SAMN02927921_00039	SAMN02927921_00811	Hypothetical protein.	Hypothetical protein.	0.628
SFW11605.1	SFW38253.1	SAMN02927921_00039	SAMN02927921_01419	Hypothetical protein.	Hypothetical protein.	0.709
SFW11605.1	SFW42664.1	SAMN02927921_00039	SAMN02927921_01627	Hypothetical protein.	Serine/threonine protein phosphatase 1.	0.463
SFW11605.1	SFW42677.1	SAMN02927921_00039	SAMN02927921_01628	Hypothetical protein.	Putative DNA-binding domain-containing protein.	0.496
SFW11678.1	SFW42664.1	SAMN02927921_00046	SAMN02927921_01627	Protein of unknown function.	Serine/threonine protein phosphatase 1.	0.443
SFW14895.1	SFW11605.1	SAMN02927921_00281	SAMN02927921_00039	Protein of unknown function.	Hypothetical protein.	0.447
SFW14895.1	SFW34043.1	SAMN02927921_00281	SAMN02927921_01237	Protein of unknown function.	Hypothetical protein.	0.741
SFW14895.1	SFW38253.1	SAMN02927921_00281	SAMN02927921_01419	Protein of unknown function.	Hypothetical protein.	0.748
SFW14895.1	SFW42664.1	SAMN02927921_00281	SAMN02927921_01627	Protein of unknown function.	Serine/threonine protein phosphatase 1.	0.450
SFW14895.1	SFW42677.1	SAMN02927921_00281	SAMN02927921_01628	Protein of unknown function.	Putative DNA-binding domain-containing protein.	0.734
SFW26330.1	SFW11605.1	SAMN02927921_00811	SAMN02927921_00039	Hypothetical protein.	Hypothetical protein.	0.628
SFW26330.1	SFW34043.1	SAMN02927921_00811	SAMN02927921_01237	Hypothetical protein.	Hypothetical protein.	0.401
SFW26330.1	SFW42664.1	SAMN02927921_00811	SAMN02927921_01627	Hypothetical protein.	Serine/threonine protein phosphatase 1.	0.420
SFW26330.1	SFW42677.1	SAMN02927921_00811	SAMN02927921_01628	Hypothetical protein.	Putative DNA-binding domain-containing protein.	0.576
SFW34043.1	SFW14895.1	SAMN02927921_01237	SAMN02927921_00281	Hypothetical protein.	Protein of unknown function.	0.741
SFW34043.1	SFW26330.1	SAMN02927921_01237	SAMN02927921_00811	Hypothetical protein.	Hypothetical protein.	0.401
SFW34043.1	SFW38253.1	SAMN02927921_01237	SAMN02927921_01419	Hypothetical protein.	Hypothetical protein.	0.587
SFW34043.1	SFW42664.1	SAMN02927921_01237	SAMN02927921_01627	Hypothetical protein.	Serine/threonine protein phosphatase 1.	0.424

page 1 of 3

Network Stats

number of nodes:

11

number of edges:

23

average node degree:

4.18

avg. local clustering coefficient:

0.851

expected number of edges:

13

PPI enrichment p-value:

0.0073

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0008216

Spermidine metabolic process

3 of 8

2.02

1.21

0.0047

GO:0008295

Spermidine biosynthetic process

2 of 4

2.15

0.79

0.0346

GO:1901564

Organonitrogen compound metabolic process

10 of 702

0.6

0.45

0.0047

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016407

Acetyltransferase activity

4 of 28

1.6

1.23

0.0021

GO:0008080

N-acetyltransferase activity

3 of 24

1.55

0.85

0.0169

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4479

Mixed, incl. Spermidine metabolic process, and Methionine biosynthesis

7 of 26

1.88

3.55

1.75e-09

CL:4482

Polyamine biosynthesis, and Spermine metabolic process

4 of 7

2.21

2.62

6.55e-06

CL:4511

Mixed, incl. Acetyltransferase (GNAT) domain, and Spermine metabolic process

3 of 10

1.93

1.45

0.0013

CL:4513

Acetyltransferase (GNAT) domain, and DeoR C terminal sensor domain

2 of 5

2.05

0.83

0.0280

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00330

Arginine and proline metabolism

3 of 30

1.45

0.78

0.0214

map00360

Phenylalanine metabolism

2 of 13

1.64

0.67

0.0489

map01100

Metabolic pathways

10 of 1082

0.42

0.3

0.0214

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0745

Spermidine biosynthesis

2 of 4

2.15

0.76

0.0395

KW-0620

Polyamine biosynthesis

2 of 4

2.15

0.76

0.0395

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF13420

Acetyltransferase (GNAT) domain

3 of 5

2.23

1.6

0.00094

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