STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW52491.1Glycosyl hydrolase family 20, domain 2. (899 aa)    
Predicted Functional Partners:
SFW52352.1
Hypothetical protein.
     0.891
SFW52506.1
Glycosyl hydrolases family 2, TIM barrel domain; Belongs to the glycosyl hydrolase 2 family.
 
     0.890
SFW52478.1
Sugar phosphate isomerase/epimerase.
 
     0.879
SFW52431.1
Trehalase.
 
    0.827
SFW52375.1
Glycosyl hydrolases family 32 N-terminal domain-containing protein.
 
    0.816
SFW52112.1
Right handed beta helix region.
 
    0.807
SFW52361.1
Putative collagen-binding domain of a collagenase.
 
    0.803
SFW52212.1
Glycosyl hydrolases family 2, sugar binding domain.
 
    0.802
SFW52405.1
Acetyl xylan esterase (AXE1).
 
     0.802
SFW52227.1
Hypothetical protein.
 
     0.797
Your Current Organism:
Sinomicrobium oceani
NCBI taxonomy Id: 1150368
Other names: CGMCC 1.12145, Flavobacteriaceae bacterium SCSIO 03483, KCTC 23994, S. oceani, SCSIO 03483, Sinomicrobium oceani Xu et al. 2013
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.