STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW55115.1Ubiquitin-hydrolase Zn-finger-containing protein. (96 aa)    
Predicted Functional Partners:
SFW55130.1
Thioredoxin reductase (NADPH).
 
   
 0.944
SFW55103.1
Acetyl esterase/lipase.
       0.693
SFW55155.1
Predicted Kef-type K+ transport protein, K+/H+ antiporter domain.
     
 0.693
SFW55530.1
Hypothetical protein.
  
     0.647
SFW55144.1
Glutaredoxin.
       0.639
SFW55175.1
Uncharacterized Fe-S cluster protein YjdI.
       0.630
SFW55196.1
Hypothetical protein.
       0.618
SFW55095.1
Hypothetical protein.
 
     0.581
SFW55059.1
Dimethylhistidine N-methyltransferase.
 
    0.555
SFW19784.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
  
   
 0.528
Your Current Organism:
Sinomicrobium oceani
NCBI taxonomy Id: 1150368
Other names: CGMCC 1.12145, Flavobacteriaceae bacterium SCSIO 03483, KCTC 23994, S. oceani, SCSIO 03483, Sinomicrobium oceani Xu et al. 2013
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.