STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW63928.1O-antigen ligase. (395 aa)    
Predicted Functional Partners:
SFW42233.1
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.890
SFW63954.1
Glycosyltransferase involved in cell wall bisynthesis.
  
 
 0.824
SFW64015.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
  
 0.824
SFW63916.1
N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase; Belongs to the glycosyltransferase 26 family.
     
 0.808
SFW63978.1
Hypothetical protein.
  
 
 0.807
SFW63940.1
Hypothetical protein.
       0.773
SFW63967.1
Hypothetical protein.
       0.773
SFW64003.1
Coenzyme F420-reducing hydrogenase, beta subunit.
       0.772
SFW63990.1
Polysaccharide pyruvyl transferase family protein WcaK.
       0.762
SFW64027.1
UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
       0.748
Your Current Organism:
Sinomicrobium oceani
NCBI taxonomy Id: 1150368
Other names: CGMCC 1.12145, Flavobacteriaceae bacterium SCSIO 03483, KCTC 23994, S. oceani, SCSIO 03483, Sinomicrobium oceani Xu et al. 2013
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.