STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW72290.1Beta-galactosidase GanA. (540 aa)    
Predicted Functional Partners:
SFW75200.1
Carboxypeptidase C (cathepsin A).
   
 0.866
SFW72283.1
Glycosyl hydrolase family 115.
 
     0.785
SFW72276.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.738
SFW71485.1
Alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
 
     0.678
SFW28802.1
Hypothetical protein.
    
 0.604
SFW60750.1
O-Glycosyl hydrolase.
  
 0.565
SFW25998.1
Ankyrin repeat-containing protein.
   
 0.534
SFW26012.1
Ankyrin repeat-containing protein.
   
 0.534
SFW76911.1
Ankyrin repeat.
   
 0.534
SFW76916.1
Ankyrin repeat.
   
 0.534
Your Current Organism:
Sinomicrobium oceani
NCBI taxonomy Id: 1150368
Other names: CGMCC 1.12145, Flavobacteriaceae bacterium SCSIO 03483, KCTC 23994, S. oceani, SCSIO 03483, Sinomicrobium oceani Xu et al. 2013
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.