Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SFW25888.1 | SFW72362.1 | SAMN02927921_00777 | SAMN02927921_03672 | Ribosomal protein L11 methyltransferase. | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.465 |
| SFW54002.1 | SFW72362.1 | SAMN02927921_02190 | SAMN02927921_03672 | Small subunit ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.445 |
| SFW54002.1 | lysS | SAMN02927921_02190 | SAMN02927921_03442 | Small subunit ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.481 |
| SFW54002.1 | rpoC | SAMN02927921_02190 | SAMN02927921_03771 | Small subunit ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.989 |
| SFW61101.1 | SFW72362.1 | SAMN02927921_02691 | SAMN02927921_03672 | Septum formation protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.559 |
| SFW64884.1 | SFW72362.1 | SAMN02927921_02985 | SAMN02927921_03672 | tRNA-U20-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.424 |
| SFW64884.1 | trmB | SAMN02927921_02985 | SAMN02927921_02361 | tRNA-U20-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.437 |
| SFW72355.1 | SFW72362.1 | SAMN02927921_03671 | SAMN02927921_03672 | Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains. | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | 0.520 |
| SFW72355.1 | SFW72368.1 | SAMN02927921_03671 | SAMN02927921_03673 | Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains. | Hypothetical protein. | 0.489 |
| SFW72355.1 | SFW72374.1 | SAMN02927921_03671 | SAMN02927921_03674 | Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains. | Hypothetical protein. | 0.489 |
| SFW72355.1 | rpoC | SAMN02927921_03671 | SAMN02927921_03771 | Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.463 |
| SFW72362.1 | SFW25888.1 | SAMN02927921_03672 | SAMN02927921_00777 | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Ribosomal protein L11 methyltransferase. | 0.465 |
| SFW72362.1 | SFW54002.1 | SAMN02927921_03672 | SAMN02927921_02190 | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Small subunit ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.445 |
| SFW72362.1 | SFW61101.1 | SAMN02927921_03672 | SAMN02927921_02691 | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Septum formation protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids. | 0.559 |
| SFW72362.1 | SFW64884.1 | SAMN02927921_03672 | SAMN02927921_02985 | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | tRNA-U20-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.424 |
| SFW72362.1 | SFW72355.1 | SAMN02927921_03672 | SAMN02927921_03671 | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains. | 0.520 |
| SFW72362.1 | SFW72368.1 | SAMN02927921_03672 | SAMN02927921_03673 | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Hypothetical protein. | 0.792 |
| SFW72362.1 | SFW72374.1 | SAMN02927921_03672 | SAMN02927921_03674 | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | Hypothetical protein. | 0.792 |
| SFW72362.1 | lysS | SAMN02927921_03672 | SAMN02927921_03442 | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.438 |
| SFW72362.1 | rpoC | SAMN02927921_03672 | SAMN02927921_03771 | 23S rRNA m(5)U-1939 methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.414 |
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