STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW75225.1RNA polymerase sigma-70 factor, ECF subfamily. (178 aa)    
Predicted Functional Partners:
SFW75218.1
Hypothetical protein.
 
     0.784
SFW75212.1
Hypothetical protein.
 
     0.783
SFW26600.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.767
SFW38088.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.753
SFW23960.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.745
SFW62906.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.744
SFW59436.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.738
SFW74833.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.738
SFW62861.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.720
SFW37855.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.718
Your Current Organism:
Sinomicrobium oceani
NCBI taxonomy Id: 1150368
Other names: CGMCC 1.12145, Flavobacteriaceae bacterium SCSIO 03483, KCTC 23994, S. oceani, SCSIO 03483, Sinomicrobium oceani Xu et al. 2013
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.