STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW75681.1Hypothetical protein. (102 aa)    
Predicted Functional Partners:
SFW75688.1
Hypothetical protein.
 
     0.771
SFW64549.1
Protein of unknown function.
  
     0.584
SFW57254.1
Iron complex transport system substrate-binding protein.
  
     0.543
SFW57003.1
Hypothetical protein.
  
     0.534
SFW14895.1
Protein of unknown function.
  
     0.527
SFW49230.1
Hypothetical protein.
  
     0.522
SFW38253.1
Hypothetical protein.
  
     0.502
SFW69402.1
CarboxypepD_reg-like domain-containing protein.
  
     0.448
SFW75694.1
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
       0.446
nadA
Quinolinate synthetase; Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate.
       0.446
Your Current Organism:
Sinomicrobium oceani
NCBI taxonomy Id: 1150368
Other names: CGMCC 1.12145, Flavobacteriaceae bacterium SCSIO 03483, KCTC 23994, S. oceani, SCSIO 03483, Sinomicrobium oceani Xu et al. 2013
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