Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CCG06678.1 | CCG08104.1 | RSPPHO_00052 | RSPPHO_01478 | PpsR. | Phytoene synthase. | 0.792 |
CCG06678.1 | CCG08113.1 | RSPPHO_00052 | RSPPHO_01487 | PpsR. | Protoporphyrin IX magnesium-chelatase; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. | 0.646 |
CCG06678.1 | bchB | RSPPHO_00052 | RSPPHO_00024 | PpsR. | Light-independent protochlorophyllide reductase subunit B; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. | 0.870 |
CCG06678.1 | bchF | RSPPHO_00052 | RSPPHO_00022 | PpsR. | 2-vinyl bacteriochlorophyllide hydratase, putative. | 0.869 |
CCG06678.1 | bchG | RSPPHO_00052 | RSPPHO_00053 | PpsR. | Geranylgeranyl-bacteriochlorophyll synthetase. | 0.984 |
CCG06678.1 | bchN | RSPPHO_00052 | RSPPHO_00023 | PpsR. | Light-independent protochlorophyllide reductase subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. | 0.887 |
CCG06678.1 | bchP | RSPPHO_00052 | RSPPHO_00051 | PpsR. | Geranylgeranyl reductase BchP. | 0.995 |
CCG06678.1 | bchY | RSPPHO_00052 | RSPPHO_01499 | PpsR. | Chlorophyllide reductase subunit Y. | 0.875 |
CCG06678.1 | bchZ | RSPPHO_00052 | RSPPHO_01498 | PpsR. | Chlorin reductase subunit. | 0.842 |
CCG06678.1 | crtE | RSPPHO_00052 | RSPPHO_02324 | PpsR. | CrtE; Belongs to the FPP/GGPP synthase family. | 0.733 |
CCG08104.1 | CCG06678.1 | RSPPHO_01478 | RSPPHO_00052 | Phytoene synthase. | PpsR. | 0.792 |
CCG08104.1 | CCG08113.1 | RSPPHO_01478 | RSPPHO_01487 | Phytoene synthase. | Protoporphyrin IX magnesium-chelatase; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. | 0.756 |
CCG08104.1 | bchB | RSPPHO_01478 | RSPPHO_00024 | Phytoene synthase. | Light-independent protochlorophyllide reductase subunit B; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. | 0.758 |
CCG08104.1 | bchF | RSPPHO_01478 | RSPPHO_00022 | Phytoene synthase. | 2-vinyl bacteriochlorophyllide hydratase, putative. | 0.718 |
CCG08104.1 | bchG | RSPPHO_01478 | RSPPHO_00053 | Phytoene synthase. | Geranylgeranyl-bacteriochlorophyll synthetase. | 0.770 |
CCG08104.1 | bchN | RSPPHO_01478 | RSPPHO_00023 | Phytoene synthase. | Light-independent protochlorophyllide reductase subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex. | 0.792 |
CCG08104.1 | bchP | RSPPHO_01478 | RSPPHO_00051 | Phytoene synthase. | Geranylgeranyl reductase BchP. | 0.968 |
CCG08104.1 | bchY | RSPPHO_01478 | RSPPHO_01499 | Phytoene synthase. | Chlorophyllide reductase subunit Y. | 0.762 |
CCG08104.1 | bchZ | RSPPHO_01478 | RSPPHO_01498 | Phytoene synthase. | Chlorin reductase subunit. | 0.736 |
CCG08104.1 | crtE | RSPPHO_01478 | RSPPHO_02324 | Phytoene synthase. | CrtE; Belongs to the FPP/GGPP synthase family. | 0.947 |
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