STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG06683.1GGDEF domain. (415 aa)    
Predicted Functional Partners:
CCG08276.1
Response regulator containing a CheY-like receiver domain and an HD-GYP domain.
  
 0.925
CCG07361.1
Response regulator containing a CheY-like receiver domain and an HD-GYP domain.
  
 0.885
CCG06763.1
Two component transcriptional regulator, winged helix family.
 
 
  
 0.876
CCG09448.1
Response regulator receiver:Metal-dependent phosphohydrolase, HD subdomain.
  
 0.875
CCG07460.1
Predicted signal transduction protein.
 
 0.853
CCG06691.1
Putative diguanylate phosphodiesterase (EAL domain).
  
 0.830
CCG08836.1
Hypothetical 1041 kDa protein in hypE 3'region.
 
  
 0.809
CCG06682.1
Peptidase S49.
       0.773
CCG07942.1
HD-GYP domain.
 
 0.658
CCG06907.1
Diguanylate cyclase/phosphodiesterase.
 
  
 0.630
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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