CCG06731.1 protein (Pararhodospirillum photometricum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCG06731.1

Cyclic nucleotide-binding:Bacterial regulatory protein, Crp. (137 aa)

Predicted Functional Partners:

CCG06730.1

0.994

accA

0.773

CCG06733.1

0.773

CCG06729.1

0.665

CCG06734.1

0.658

CCG06735.1

0.605

CCG06627.1

0.547

CCG06736.1

0.524

CCG09157.1

0.517

CCG07557.1

0.470

Your Current Organism:

Pararhodospirillum photometricum

NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCG06627.1	CCG06730.1	RSPPHO_00001	RSPPHO_00104	Adenylate cyclase.	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	0.547
CCG06627.1	CCG06731.1	RSPPHO_00001	RSPPHO_00105	Adenylate cyclase.	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	0.547
CCG06627.1	CCG09157.1	RSPPHO_00001	RSPPHO_02531	Adenylate cyclase.	Leucine-rich repeat.	0.490
CCG06729.1	CCG06730.1	RSPPHO_00103	RSPPHO_00104	Putative uncharacterized protein.	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	0.670
CCG06729.1	CCG06731.1	RSPPHO_00103	RSPPHO_00105	Putative uncharacterized protein.	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	0.665
CCG06729.1	CCG06733.1	RSPPHO_00103	RSPPHO_00107	Putative uncharacterized protein.	Citrate lyase; Belongs to the HpcH/HpaI aldolase family.	0.417
CCG06729.1	accA	RSPPHO_00103	RSPPHO_00106	Putative uncharacterized protein.	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.	0.417
CCG06730.1	CCG06627.1	RSPPHO_00104	RSPPHO_00001	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	Adenylate cyclase.	0.547
CCG06730.1	CCG06729.1	RSPPHO_00104	RSPPHO_00103	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	Putative uncharacterized protein.	0.670
CCG06730.1	CCG06731.1	RSPPHO_00104	RSPPHO_00105	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	0.994
CCG06730.1	CCG06733.1	RSPPHO_00104	RSPPHO_00107	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	Citrate lyase; Belongs to the HpcH/HpaI aldolase family.	0.773
CCG06730.1	CCG06734.1	RSPPHO_00104	RSPPHO_00108	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	Putative uncharacterized protein.	0.658
CCG06730.1	CCG06735.1	RSPPHO_00104	RSPPHO_00109	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	ATPase FliI/YscN.	0.605
CCG06730.1	CCG06736.1	RSPPHO_00104	RSPPHO_00110	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	Two component transcriptional regulator, winged helix family / cell cycle transcriptional regulator CtrA.	0.524
CCG06730.1	CCG07557.1	RSPPHO_00104	RSPPHO_00931	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	Adenylate/guanylate cyclase.	0.470
CCG06730.1	CCG09157.1	RSPPHO_00104	RSPPHO_02531	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	Leucine-rich repeat.	0.517
CCG06730.1	accA	RSPPHO_00104	RSPPHO_00106	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.	0.773
CCG06731.1	CCG06627.1	RSPPHO_00105	RSPPHO_00001	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	Adenylate cyclase.	0.547
CCG06731.1	CCG06729.1	RSPPHO_00105	RSPPHO_00103	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	Putative uncharacterized protein.	0.665
CCG06731.1	CCG06730.1	RSPPHO_00105	RSPPHO_00104	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	Cyclic nucleotide-binding:Bacterial regulatory protein, Crp.	0.994