STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG06748.1Peptidase S1C, Do; Belongs to the peptidase S1C family. (587 aa)    
Predicted Functional Partners:
CCG07510.1
OmpA family protein.
   
 
 0.928
CCG06747.1
HflC; HflC and HflK could regulate a protease.
 
 
 0.827
CCG06745.1
HflK; HflC and HflK could encode or regulate a protease.
  
 
 0.803
CCG06744.1
Putative uncharacterized protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
 
   
 0.619
CCG08503.1
Mov34/MPN/PAD-1.
   
 0.610
rplY
50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
 
   0.597
CCG09693.1
Ankyrin.
  
 0.594
CCG08998.1
Ankrd17 protein.
  
 0.583
glpK
Glycerol kinase.
   
 0.577
CCG07227.1
Carbohydrate kinase, FGGY.
   
 0.577
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.