STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG06873.1Phosphoribulokinase. (288 aa)    
Predicted Functional Partners:
ccbS2
Ribulose bisphosphate carboxylase, small subunit.
 
 
 0.870
CCG06872.1
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
  
 0.868
CCG06875.1
Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 
 0.843
cbbM
Ribulose bisphosphate carboxylase; Belongs to the RuBisCO large chain family.
 
 
 0.827
fbp
Fructose-1,6-bisphosphatase class 1; Belongs to the FBPase class 1 family.
 
  
 0.778
cbbL2
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
 
  
 0.767
CCG09414.1
Ribulose 1,5-bisphosphate carboxylase large subunit.
 
 
 0.675
cbbO
Rubisco activation protein CbbO, putative.
 
   
 0.514
CCG08663.1
Ribose-5-phosphate isomerase.
     
  0.499
CCG06876.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
   
 0.484
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.