STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG06880.1Transcriptional regulator, ArsR family. (311 aa)    
Predicted Functional Partners:
CCG06882.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.834
metF
Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
 
   
 0.741
nifJ
Pyruvate-flavodoxin oxidoreductase.
   
 
 0.663
CCG08971.1
Bile acid:sodium symporter.
  
  
 0.562
CCG08589.1
Membrane anion transport protein.
  
  
 0.552
CCG07533.1
Ubiquinol-cytochrome C chaperone.
  
     0.541
CCG08930.1
Aminomethyltransferase; Belongs to the GcvT family.
  
  
 0.535
CCG08662.1
Transcriptional regulator, MucR family.
  
   
 0.532
CCG06615.1
Putative glycosyl transferase (Glycosyl transferase family 2).
  
  
 0.529
CCG06803.1
Transcriptional regulator, MucR family.
  
   
 0.527
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.