STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG06894.1Hydrogenase accessory protein HypB. (318 aa)    
Predicted Functional Partners:
hypA
Hydrogenase expression/synthesis, HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
 
 0.987
hypD
Hydrogenase expression/formation protein HypD.
 
  
 0.980
hypC
Hydrogenase expression/formation protein HypC.
 
  
 0.979
hypF
Hydrogenase maturation factor.
 
   
 0.964
hypE
Hydrogenase expression/formation protein HypE.
 
  
 0.958
ureF
Urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
  
 
 0.916
ureE
Urease accessory protein E; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
  
 
 0.872
CCG06896.1
Ni,Fe-hydrogenase I large subunit.
     
 0.828
ureD
Possible urease accessory protein D; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
  
 
 0.800
CCG06903.1
Ni-Fe hydrogenase, small subunit.
 
  
 0.692
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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