STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG06901.1Nickel-dependent hydrogenase, large subunit. (190 aa)    
Predicted Functional Partners:
CCG06903.1
Ni-Fe hydrogenase, small subunit.
 
 
 0.998
CCG06902.1
Nickel-dependent hydrogenase, large subunit.
     0.994
CCG06900.1
Nickel-dependent hydrogenase b-type cytochrome subunit.
 
 
 0.992
CCG06899.1
HyaD peptidase. Aspartic peptidase. MEROPS family A31.
 
 
 0.955
CCG06898.1
Hydrogenase expression/formation protein hupH.
 
 
 0.931
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.902
frhB
Coenzyme F420 hydrogenase.
  
 
 0.890
hypA
Hydrogenase expression/synthesis, HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
 
 0.840
CCG09183.1
2-oxoglutarate synthase, alpha subunit.
   
  
 0.716
hypD
Hydrogenase expression/formation protein HypD.
 
 
 0.678
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.