CCG07029.1 protein (Pararhodospirillum photometricum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCG07029.1

Universal stress protein UspA and related nucleotide-binding proteins. (278 aa)

Predicted Functional Partners:

CCG07028.1

0.508

CCG07030.1

0.493

ada

0.467

CCG08256.1

0.453

CCG09120.1

0.440

CCG07237.1

0.434

CCG07031.1

0.401

Your Current Organism:

Pararhodospirillum photometricum

NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCG07028.1	CCG07029.1	RSPPHO_00402	RSPPHO_00403	5-aminolevulinate synthase.	Universal stress protein UspA and related nucleotide-binding proteins.	0.508
CCG07029.1	CCG07028.1	RSPPHO_00403	RSPPHO_00402	Universal stress protein UspA and related nucleotide-binding proteins.	5-aminolevulinate synthase.	0.508
CCG07029.1	CCG07030.1	RSPPHO_00403	RSPPHO_00404	Universal stress protein UspA and related nucleotide-binding proteins.	MutT/nudix family protein.	0.493
CCG07029.1	CCG07031.1	RSPPHO_00403	RSPPHO_00405	Universal stress protein UspA and related nucleotide-binding proteins.	Heat shock protein Hsp20; Belongs to the small heat shock protein (HSP20) family.	0.401
CCG07029.1	CCG07237.1	RSPPHO_00403	RSPPHO_00611	Universal stress protein UspA and related nucleotide-binding proteins.	Ribosomal subunit interface protein, putative.	0.434
CCG07029.1	CCG08256.1	RSPPHO_00403	RSPPHO_01630	Universal stress protein UspA and related nucleotide-binding proteins.	Coproporphyrinogen III oxidase, anaerobic; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.453
CCG07029.1	CCG09120.1	RSPPHO_00403	RSPPHO_02494	Universal stress protein UspA and related nucleotide-binding proteins.	Uroporphyrinogen III synthase HEM4; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.	0.440
CCG07029.1	ada	RSPPHO_00403	RSPPHO_02244	Universal stress protein UspA and related nucleotide-binding proteins.	ADA regulatory protein, putative.	0.467
CCG07030.1	CCG07029.1	RSPPHO_00404	RSPPHO_00403	MutT/nudix family protein.	Universal stress protein UspA and related nucleotide-binding proteins.	0.493
CCG07030.1	CCG07031.1	RSPPHO_00404	RSPPHO_00405	MutT/nudix family protein.	Heat shock protein Hsp20; Belongs to the small heat shock protein (HSP20) family.	0.436
CCG07031.1	CCG07029.1	RSPPHO_00405	RSPPHO_00403	Heat shock protein Hsp20; Belongs to the small heat shock protein (HSP20) family.	Universal stress protein UspA and related nucleotide-binding proteins.	0.401
CCG07031.1	CCG07030.1	RSPPHO_00405	RSPPHO_00404	Heat shock protein Hsp20; Belongs to the small heat shock protein (HSP20) family.	MutT/nudix family protein.	0.436
CCG07237.1	CCG07029.1	RSPPHO_00611	RSPPHO_00403	Ribosomal subunit interface protein, putative.	Universal stress protein UspA and related nucleotide-binding proteins.	0.434
CCG08256.1	CCG07029.1	RSPPHO_01630	RSPPHO_00403	Coproporphyrinogen III oxidase, anaerobic; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Universal stress protein UspA and related nucleotide-binding proteins.	0.453
CCG09120.1	CCG07029.1	RSPPHO_02494	RSPPHO_00403	Uroporphyrinogen III synthase HEM4; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.	Universal stress protein UspA and related nucleotide-binding proteins.	0.440
ada	CCG07029.1	RSPPHO_02244	RSPPHO_00403	ADA regulatory protein, putative.	Universal stress protein UspA and related nucleotide-binding proteins.	0.467