STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG07063.1Type I secretion membrane fusion protein, HlyD. (440 aa)    
Predicted Functional Partners:
CCG07064.1
ABC-type protease/lipase transport system,ATPase and permease components.
 
 0.989
CCG09581.1
ABC transporter, ATP-binding protein.
 
 0.950
CCG06578.1
ABC-type protease/lipase transport system, ATPase and permease components.
 
 
 0.948
CCG09655.1
Outer membrane efflux protein.
 
 
 0.911
CCG09537.1
Type I secretion outer membrane protein, TolC.
 
 
 0.856
CCG07417.1
Peptidase M10A and M12B, matrixin and adamalysin.
 
  
 0.790
CCG09252.1
Outer membrane protein.
 
 
 0.718
CCG09060.1
Outer membrane efflux protein.
 
 
 0.717
CCG09580.1
Toxin secretion ATP-binding protein.
 
 
0.709
CCG07224.1
RND efflux system, outer membrane lipoprotein,NodT.
  
 
 0.698
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.