STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG07273.1Phosphoesterase, PA-phosphatase related. (212 aa)    
Predicted Functional Partners:
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.830
CCG09116.1
Phosphoesterase, PA-phosphatase related.
 
  
 0.706
CCG06690.1
AMP-dependent synthetase and ligase.
    
 0.627
CCG07715.1
Long chain fatty acid CoA ligase.
    
 0.627
CCG09242.1
Acyl-CoA synthetase, putative.
    
 0.627
CCG09441.1
AMP-dependent synthetase and ligase.
    
 0.627
CCG07272.1
3-hydroxyacyl-CoA dehydrogenase.
       0.607
CCG08855.1
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
  
 0.600
CCG06615.1
Putative glycosyl transferase (Glycosyl transferase family 2).
  
  
 0.590
CCG07734.1
Phenolpthiocerol synthesis polyketide synthase ppsA.
  
 
 0.569
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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