STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG07393.1Transcriptional regulator, NifA subfamily, Fis family. (543 aa)    
Predicted Functional Partners:
nifA
Transcriptional activator NifA.
  
  
 
0.918
CCG07108.1
Transcriptional regulator, NifA subfamily, Fis family.
  
  
 
0.905
CCG09818.1
Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.803
CCG09364.1
Sensor protein.
   
 
 0.525
CCG08892.1
Sensor protein.
   
 
 0.503
CCG09068.1
Sensor protein.
   
 
 0.503
CCG08362.1
Sensor protein.
   
 
 0.484
CCG08172.1
Sensor protein.
   
 
 0.481
CCG08326.1
Sensor protein.
   
 
 0.481
CCG08277.1
Sensor protein.
   
 
 0.478
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.