CCG07445.1 protein (Pararhodospirillum photometricum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCG07445.1

Sensor protein. (873 aa)

Predicted Functional Partners:

CCG08577.1

0.997

CCG07768.1

0.987

CCG06630.1

0.971

CCG09364.1

0.970

CCG08277.1

0.965

CCG09501.1

0.965

CCG06665.1

0.949

CCG08428.1

0.949

CCG09263.1

0.949

CCG08172.1

0.935

Your Current Organism:

Pararhodospirillum photometricum

NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCG06630.1	CCG06665.1	RSPPHO_00004	RSPPHO_00039	FOG: CheY-like receiver.	Sensor protein.	0.598
CCG06630.1	CCG07445.1	RSPPHO_00004	RSPPHO_00819	FOG: CheY-like receiver.	Sensor protein.	0.971
CCG06630.1	CCG08172.1	RSPPHO_00004	RSPPHO_01546	FOG: CheY-like receiver.	Sensor protein.	0.725
CCG06630.1	CCG08277.1	RSPPHO_00004	RSPPHO_01651	FOG: CheY-like receiver.	Sensor protein.	0.945
CCG06630.1	CCG08428.1	RSPPHO_00004	RSPPHO_01802	FOG: CheY-like receiver.	Sensor protein.	0.751
CCG06630.1	CCG08577.1	RSPPHO_00004	RSPPHO_01951	FOG: CheY-like receiver.	Sensor protein.	0.441
CCG06630.1	CCG09263.1	RSPPHO_00004	RSPPHO_02637	FOG: CheY-like receiver.	Sensor protein.	0.797
CCG06630.1	CCG09364.1	RSPPHO_00004	RSPPHO_02738	FOG: CheY-like receiver.	Sensor protein.	0.840
CCG06630.1	CCG09501.1	RSPPHO_00004	RSPPHO_02875	FOG: CheY-like receiver.	Sensor protein.	0.946
CCG06665.1	CCG06630.1	RSPPHO_00039	RSPPHO_00004	Sensor protein.	FOG: CheY-like receiver.	0.598
CCG06665.1	CCG07445.1	RSPPHO_00039	RSPPHO_00819	Sensor protein.	Sensor protein.	0.949
CCG06665.1	CCG07768.1	RSPPHO_00039	RSPPHO_01142	Sensor protein.	Sensor protein.	0.646
CCG06665.1	CCG08172.1	RSPPHO_00039	RSPPHO_01546	Sensor protein.	Sensor protein.	0.973
CCG06665.1	CCG08277.1	RSPPHO_00039	RSPPHO_01651	Sensor protein.	Sensor protein.	0.985
CCG06665.1	CCG08428.1	RSPPHO_00039	RSPPHO_01802	Sensor protein.	Sensor protein.	0.973
CCG06665.1	CCG08577.1	RSPPHO_00039	RSPPHO_01951	Sensor protein.	Sensor protein.	0.950
CCG06665.1	CCG09263.1	RSPPHO_00039	RSPPHO_02637	Sensor protein.	Sensor protein.	0.973
CCG06665.1	CCG09364.1	RSPPHO_00039	RSPPHO_02738	Sensor protein.	Sensor protein.	0.984
CCG06665.1	CCG09501.1	RSPPHO_00039	RSPPHO_02875	Sensor protein.	Sensor protein.	0.985
CCG07445.1	CCG06630.1	RSPPHO_00819	RSPPHO_00004	Sensor protein.	FOG: CheY-like receiver.	0.971