STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betBBetaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (604 aa)    
Predicted Functional Partners:
fmt
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
    
 0.874
CCG06922.1
Malate dehydrogenase.
  
  
 0.637
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.623
CCG07488.1
TRAP-type C4-dicarboxylate transport system periplasmic component-like.
     
 0.577
r-adh
Alcohol dehydrogenase; Name=r-adh.
 
 
 0.560
CCG08930.1
Aminomethyltransferase; Belongs to the GcvT family.
  
  
 0.555
CCG07489.1
Alpha/beta hydrolase fold.
  
  
 0.540
CCG06882.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 
 0.524
CCG07757.1
Fumarylacetoacetate (FAA) hydrolase.
  
 
 0.519
CCG07758.1
Fumarylacetoacetate (FAA) hydrolase.
  
 
 0.519
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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