STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG07749.1Nitrogen-fixing NifU-like. (122 aa)    
Predicted Functional Partners:
CCG09158.1
NifQ protein.
 
 
 0.866
CCG07750.1
HesB/YadR/YfhF; Belongs to the HesB/IscA family.
  
 
 0.848
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.807
nifW
NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
   
 0.772
CCG09136.1
Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 
 0.714
CCG06939.1
Leucine rich repeat variant.
  
    0.704
CCG08728.1
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzyme.
  
 
 0.694
CCG09193.1
Aminotransferase, class V.
  
 
 0.694
CCG09159.1
4Fe-4S ferredoxin, iron-sulfur binding.
 
  
 0.676
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
  
 
 0.652
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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