STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbGCDP-glucose 4,6-dehydratase, putative. (359 aa)    
Predicted Functional Partners:
rfbF
Glucose-1-phosphate cytidylyltransferase,putative.
 0.999
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase, putative.
  
 0.938
CCG07801.1
Methyltransferase, putative.
 
   
 0.876
CCG07805.1
Putative uncharacterized protein.
 
    0.826
CCG07440.1
UDP-glucose pyrophosphorylase.
  
 
 0.822
CCG07800.1
Transferase hexapeptide repeat.
  
  
 0.813
CCG07799.1
NAD-dependent epimerase/dehydratase.
       0.774
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
 0.721
rpsS
30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.705
CCG07798.1
Methyltransferase, homolog.
  
 
 0.704
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.