STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG08029.1TPR repeat. (163 aa)    
Predicted Functional Partners:
CCG08028.1
TPR repeat.
   
 0.989
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
 
    0.846
CCG08027.1
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
       0.821
cpoB
Putative uncharacterized protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
 
  
 0.663
CCG08692.1
C-terminal processing peptidase S41A; Belongs to the peptidase S41A family.
 
 
 0.650
CCG06735.1
ATPase FliI/YscN.
  
 
 0.618
nifJ
Pyruvate-flavodoxin oxidoreductase.
   
   0.613
exbD1
Biopolymer transport ExbD protein.
 
   
 0.514
CCG06615.1
Putative glycosyl transferase (Glycosyl transferase family 2).
  
  
 0.503
CCG08349.1
Type II and III secretion system protein; Belongs to the bacterial secretin family.
  
  
 0.486
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.