STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG08105.1Phytoene desaturase. (519 aa)    
Predicted Functional Partners:
CCG08104.1
Phytoene synthase.
 
 0.999
crtC
CrtC.
 
 
 0.965
CCG08981.1
Putative phytoene synthase protein.
  
 
 0.959
CCG07059.1
Squalene-phytoene synthase.
 
  
 0.801
bchF
2-vinyl bacteriochlorophyllide hydratase, putative.
 
  
 0.764
CCG07060.1
Unnamed protein product.
 
  
 0.739
bchP
Geranylgeranyl reductase BchP.
 
  
 0.728
CCG08113.1
Protoporphyrin IX magnesium-chelatase; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
  
  
 0.720
bchZ
Chlorin reductase subunit.
 
  
 0.720
bchC
BchC.
 
  
 0.691
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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