STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG08175.1AMP-dependent synthetase and ligase. (607 aa)    
Predicted Functional Partners:
CCG07004.1
AMP-dependent synthetase and ligase.
  
  
 
0.926
CCG09441.1
AMP-dependent synthetase and ligase.
 
 
0.925
CCG07263.1
Isovaleryl-CoA dehydrogenase.
  
 0.669
CCG08658.1
Butyryl-CoA dehydrogenase.
  
 0.669
CCG08850.1
Unnamed protein product.
  
 0.669
CCG09246.1
Acyl-CoA dehydrogenase.
  
 0.669
CCG09436.1
Acyl-CoA dehydrogenase.
  
 0.669
CCG09518.1
Acyl-CoA dehydrogenase.
  
 0.669
CCG08176.1
Peptidase M3B, oligoendopeptidase-related clade 3.
  
    0.639
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
  
  
 0.599
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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