STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ureDPossible urease accessory protein D; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. (262 aa)    
Predicted Functional Partners:
ureF
Urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
 
 0.998
ureB
Urease beta subunit (Urea amidohydrolase); Belongs to the urease beta subunit family.
 
 
 0.990
ureA
Urease gamma subunit; Belongs to the urease gamma subunit family.
 
 
 0.986
ureE
Urease accessory protein E; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
 
  
 0.982
ureG
Urease accessory protein ureG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
 
 
 0.977
ureC
Urease.
 
  
 0.965
CCG08189.1
ATP-binding component of ABC transporter.
 
   
 0.838
CCG08188.1
ATP-binding component of ABC transporter.
 
   
 0.830
CCG08186.1
Urea transport system permease protein; Ureashort-chain amide or branched-chain amino acid uptake ABC transporter permease protein, possibly fusion protein; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.820
CCG08187.1
Permease of ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.815
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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