STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG08220.1Lytic transglycosylase, catalytic. (315 aa)    
Predicted Functional Partners:
CCG08219.1
Putative uncharacterized protein.
 
     0.926
CCG08218.1
Conjugal transfer protein.
 
     0.882
CCG08213.1
Putative uncharacterized protein.
 
     0.860
CCG08217.1
Putative uncharacterized protein.
 
     0.852
CCG08214.1
RepA.
 
     0.734
CCG08221.1
Putative uncharacterized protein.
 
   
 0.732
CCG08244.1
Putative uncharacterized protein.
 
     0.728
CCG08229.1
Putative uncharacterized protein.
 
     0.722
CCG08212.1
Putative uncharacterized protein.
 
     0.716
CCG08216.1
Putative uncharacterized protein.
 
     0.705
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.