CCG08226.1 protein (Pararhodospirillum photometricum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCG08226.1

Monooxygenase. (352 aa)

Predicted Functional Partners:

CCG08227.1

0.832

CCG07021.1

0.586

CCG08225.1

0.568

CCG08228.1

0.543

CCG07710.1

0.534

CCG08626.1

0.526

CCG07020.1

0.514

CCG08627.1

0.514

CCG08131.1

0.509

CCG07019.1

0.498

Your Current Organism:

Pararhodospirillum photometricum

NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCG07019.1	CCG07020.1	RSPPHO_00393	RSPPHO_00394	ABC transporter component.	Binding-protein-dependent transport systems inner membrane component.	0.998
CCG07019.1	CCG07021.1	RSPPHO_00393	RSPPHO_00395	ABC transporter component.	Putative sulfonate/nitrate transport system substrate-binding protein.	0.995
CCG07019.1	CCG07710.1	RSPPHO_00393	RSPPHO_01084	ABC transporter component.	Putative diguanylate cyclase (GGDEF domain).	0.629
CCG07019.1	CCG08226.1	RSPPHO_00393	RSPPHO_01600	ABC transporter component.	Monooxygenase.	0.498
CCG07019.1	CCG08626.1	RSPPHO_00393	RSPPHO_02000	ABC transporter component.	Extracellular solute-binding protein, family 3.	0.867
CCG07019.1	CCG08627.1	RSPPHO_00393	RSPPHO_02001	ABC transporter component.	ABC-type nitrate/sulfonate/bicarbonate transport system.	0.907
CCG07020.1	CCG07019.1	RSPPHO_00394	RSPPHO_00393	Binding-protein-dependent transport systems inner membrane component.	ABC transporter component.	0.998
CCG07020.1	CCG07021.1	RSPPHO_00394	RSPPHO_00395	Binding-protein-dependent transport systems inner membrane component.	Putative sulfonate/nitrate transport system substrate-binding protein.	0.999
CCG07020.1	CCG07710.1	RSPPHO_00394	RSPPHO_01084	Binding-protein-dependent transport systems inner membrane component.	Putative diguanylate cyclase (GGDEF domain).	0.684
CCG07020.1	CCG08226.1	RSPPHO_00394	RSPPHO_01600	Binding-protein-dependent transport systems inner membrane component.	Monooxygenase.	0.514
CCG07020.1	CCG08626.1	RSPPHO_00394	RSPPHO_02000	Binding-protein-dependent transport systems inner membrane component.	Extracellular solute-binding protein, family 3.	0.901
CCG07020.1	CCG08627.1	RSPPHO_00394	RSPPHO_02001	Binding-protein-dependent transport systems inner membrane component.	ABC-type nitrate/sulfonate/bicarbonate transport system.	0.761
CCG07021.1	CCG07019.1	RSPPHO_00395	RSPPHO_00393	Putative sulfonate/nitrate transport system substrate-binding protein.	ABC transporter component.	0.995
CCG07021.1	CCG07020.1	RSPPHO_00395	RSPPHO_00394	Putative sulfonate/nitrate transport system substrate-binding protein.	Binding-protein-dependent transport systems inner membrane component.	0.999
CCG07021.1	CCG08226.1	RSPPHO_00395	RSPPHO_01600	Putative sulfonate/nitrate transport system substrate-binding protein.	Monooxygenase.	0.586
CCG07021.1	CCG08627.1	RSPPHO_00395	RSPPHO_02001	Putative sulfonate/nitrate transport system substrate-binding protein.	ABC-type nitrate/sulfonate/bicarbonate transport system.	0.739
CCG07710.1	CCG07019.1	RSPPHO_01084	RSPPHO_00393	Putative diguanylate cyclase (GGDEF domain).	ABC transporter component.	0.629
CCG07710.1	CCG07020.1	RSPPHO_01084	RSPPHO_00394	Putative diguanylate cyclase (GGDEF domain).	Binding-protein-dependent transport systems inner membrane component.	0.684
CCG07710.1	CCG08226.1	RSPPHO_01084	RSPPHO_01600	Putative diguanylate cyclase (GGDEF domain).	Monooxygenase.	0.534
CCG07710.1	CCG08627.1	RSPPHO_01084	RSPPHO_02001	Putative diguanylate cyclase (GGDEF domain).	ABC-type nitrate/sulfonate/bicarbonate transport system.	0.618