STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG08383.1Periplasmic protein TonB, links inner and outer membranes. (85 aa)    
Predicted Functional Partners:
exbD1-2
Biopolymer transport exbD1 protein, putative.
 
 
 0.971
exbB1
Biopolymer transport ExbB protein.
 
 
 0.966
exbD1
Biopolymer transport ExbD protein.
 
 
 0.965
CCG08397.1
Biopolymer transport protein ExbD/TolR.
 
 
 0.801
exbD2
Biopolymer transport ExbD protein.
  
 
 0.753
tolQ
MotA/TolQ/ExbB proton channel; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.745
CCG09228.1
TonB-dependent hemoglobin.
  
 
 0.718
exbB2
Biopolymer transport ExbB protein.
  
 
 0.709
CCG07202.1
TonB-dependent receptor.
  
 
 0.708
CCG08772.1
TonB-dependent receptor.
  
 
 0.708
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.