STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG08470.1Putative uncharacterized protein. (551 aa)    
Predicted Functional Partners:
CCG08467.1
Putative uncharacterized protein.
 
  
 0.918
CCG08468.1
Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.878
CCG08469.1
GtrA-like protein.
 
   
 0.846
CCG06615.1
Putative glycosyl transferase (Glycosyl transferase family 2).
  
  
 0.707
CCG08496.1
Glycosyl transferase, group 2 family protein.
 
  
 0.704
fmt
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 0.521
CCG08466.1
Acyl-coenzyme A synthetase/AMP-(Fatty) acid ligase.
     
 0.475
CCG09443.1
Sterol-binding.
  
     0.475
CCG07412.1
Major facilitator superfamily MFS_1.
 
     0.464
CCG08555.1
Glycosyltransferase involved in cell wall biogenesis.
 
  
 0.438
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.