STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG08603.1Helix-turn-helix protein, CopG. (136 aa)    
Predicted Functional Partners:
traG
Conjugal transfer protein.
 
     0.944
CCG08605.1
Conjugal transfer protein TrbC.
 
     0.941
CCG08606.1
Conjugal transfer protein.
 
     0.940
CCG08607.1
Conjugal transfer protein.
 
     0.940
CCG08604.1
Type II secretion system protein E.
 
     0.889
CCG08608.1
Conjugal transfer protein.
 
     0.880
CCG08609.1
P-type conjugative transfer protein TrbL.
 
     0.873
CCG08595.1
Putative uncharacterized protein.
 
   
 0.793
CCG08599.1
Putative uncharacterized protein.
 
     0.788
CCG08234.1
Conjugal transfer protein TrbC.
 
     0.786
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.