STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG08605.1Conjugal transfer protein TrbC. (97 aa)    
Predicted Functional Partners:
CCG08607.1
Conjugal transfer protein.
 
 
 0.970
CCG08606.1
Conjugal transfer protein.
   
 0.958
CCG08604.1
Type II secretion system protein E.
   
 0.948
CCG08603.1
Helix-turn-helix protein, CopG.
 
     0.941
traG
Conjugal transfer protein.
 
   
 0.938
CCG08608.1
Conjugal transfer protein.
 
   
 0.894
CCG08609.1
P-type conjugative transfer protein TrbL.
 
   
 0.882
CCG08236.1
Conjugal transfer protein.
 
 
 0.875
CCG08233.1
Type II secretion system protein E.
   
 0.849
CCG08235.1
Conjugal transfer protein.
   
 0.823
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.