STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG08616.1FAD/FMN-containing dehydrogenase. (602 aa)    
Predicted Functional Partners:
CCG08620.1
ABC transporter component.
 
   0.810
CCG08615.1
Lysine-arginine-ornithine-binding periplasmic protein.
 
  
 0.809
CCG08617.1
Aminotransferase.
  
  
 0.793
CCG08614.1
Lysine-arginine-ornithine-binding periplasmic protein.
  
  
 0.780
CCG08618.1
Amino acid ABC transporter, permease protein,3-TM region, His/Glu/Gln/Arg/opine.
       0.773
CCG08619.1
Amino acid ABC transporter, permease protein.
       0.773
CCG08021.1
Cytochrome c oxidase cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
   
 
 0.659
metC
Cystathionine beta-lyase.
     
 0.658
CCG07207.1
NAD-reducing hydrogenase diaphorase moiety largesubunit.
   
 
 0.650
CCG07271.1
Electron transfer flavoprotein.
 
 
 0.650
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.